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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2930542_2932956_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2930542 - 2932956
Intron Length:
2415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TTTCTTTTTACA
Flanking Amino Acid:
LLVFSVTDRGSFEEIYKFQR
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
71.2
0.53
1
61
37.5
Major PPT
95.3
1.02
0.5
91.2
20.6
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
63.5
0.42
1.6
76.13
34.5

Associated Gene:

Gene:
RRAS2
Ensembl Gene ID:
ENSAPLG00000019435
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037784
2922650 - 2953494
30845