Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29314775_29316574_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29314775 - 29316574

Intron Length:

1800

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAAGA

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCTCCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

GGATTCTTAATG

Flanking Amino Acid:

KTTKEDFRKQITFLNLQIDR

Intron Amino Acid Position:

265

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.8

33.7

Major BPS

0.92

0.9

86.2

29.1

Major PPT

82.3

0.73

0.7

80.7

24.6

Minor 5ss

32.8

-2

2.9

40.7

45.1

Minor BPS

65.7

0.35

1.3

61.55

40.3

Associated Gene:

Gene:

RGS6

Ensembl Gene ID:

ENSAPLG00000003719

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033291

29211133 - 29366082

154950

ENSAPLT00000003852

29111890 - 29366082

254193