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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2933060_2933784_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2933060 - 2933784
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TGCTTATATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTTGCTTATAT
Flanking Amino Acid:
VIDERAARLDILDTAGQEEF
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
66.3
39.5
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
76.5
0.6
1
74.1
39.7
Minor 5ss
32.8
-2
2.7
42.4
38.3
Minor BPS
60.4
0.4
2.1
85.22
41.1

Associated Gene:

Gene:
RRAS2
Ensembl Gene ID:
ENSAPLG00000019435
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037784
2922650 - 2953494
30845