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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29404516_29405558_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29404516 - 29405558
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATAT
5'SS Class:
major
3'SS Sequence:
TCTTCATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATTTCTTCATTT
Flanking Amino Acid:
LNPPVFEPPEGSWSCHLCRE
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
77.7
33.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.4
0.82
0.7
81
29.7
Minor 5ss
45.2
-0.5
3
64.8
46.5
Minor BPS
58.3
0.34
1.8
78.39
38.4

Associated Gene:

Gene:
DPF3
Ensembl Gene ID:
ENSAPLG00000004675
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004893
29404445 - 29494144
89700