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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29460819_29461875_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29460819 - 29461875
Intron Length:
1057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTTGA
5'SS Class:
major
3'SS Sequence:
CTTTCTTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAAAAT
U12 Branch Point Sequence:
ATCACCTGAACC
Flanking Amino Acid:
PKRKNRPRGRPKTPTWKKIF
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.6
40.3
Major BPS
58
0.2
1.2
63.9
38.5
Major PPT
84.5
0.78
0.6
84.4
23.4
Minor 5ss
45.2
-0.5
2.5
49.4
46.8
Minor BPS
65
0.45
1.5
70.84
39.9

Associated Gene:

Gene:
DPF3
Ensembl Gene ID:
ENSAPLG00000004675
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023452
29430810 - 29494193
63384