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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29466376_29488786_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29466376 - 29488786
Intron Length:
22411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATACAT
U12 Branch Point Sequence:
AGATACATACAG
Flanking Amino Acid:
SRLKLLEIKPEVDLPLKKDG
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
83.7
34.5
Major BPS
57.2
0.18
1.2
67
39.8
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
40.7
-1
3.1
56.6
42.9
Minor BPS
40.1
-0.8
2
43.34
40.9

Associated Gene:

Gene:
DPF3
Ensembl Gene ID:
ENSAPLG00000004675
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023452
29430810 - 29494193
63384