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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29570829_29571415_R

Intron Information:

Intron Rank:
141155
Intron Class:
major
Intron Phase:
Intron Coordinates:
29570829 - 29571415
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
90.4
0.91
0.6
88.5
21
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
54.7
0.23
2
80.23
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023271
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043818
29566536 - 29571629
5094