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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29608448_29609258_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29608448 - 29609258
Intron Length:
811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATAGC
5'SS Class:
major
3'SS Sequence:
TTGTCCTGATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
TTGTCCTGATCA
Flanking Amino Acid:
AYWRPNSQILSCNKCNTPFK
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
71.3
38.8
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
70.7
0.47
1
70.7
39.8
Minor 5ss
35.6
-1.6
2.8
42.6
39.3
Minor BPS
64.4
0.45
1.8
76.39
40.7

Associated Gene:

Gene:
ZFYVE1
Ensembl Gene ID:
ENSAPLG00000005610
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005816
29606345 - 29627010
20666