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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29609430_29609786_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29609430 - 29609786
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
AAATTTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTCTCAAAT
Flanking Amino Acid:
RTEIEHVWPGTDGFLKDNNN
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75
0.56
1
71.3
43
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
65.6
0.57
1.6
82.48
38.2

Associated Gene:

Gene:
ZFYVE1
Ensembl Gene ID:
ENSAPLG00000005610
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005816
29606345 - 29627010
20666