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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29609905_29610020_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29609905 - 29610020
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTCCTTTAATC
Flanking Amino Acid:
WLGLAKYAWSGYVIECPNCG
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
80.5
33.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
85.3
0.79
0.7
80.1
25.2
Minor 5ss
32.5
-2
2.7
35.6
40.5
Minor BPS
73
0.7
1.2
75.34
35.5

Associated Gene:

Gene:
ZFYVE1
Ensembl Gene ID:
ENSAPLG00000005610
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005816
29606345 - 29627010
20666