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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29610119_29610685_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29610119 - 29610685
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TACTATATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTGTTTTTAATT
Flanking Amino Acid:
QYDNRVYTCKACYERGMEVS
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.4
0.5
0.9
66.1
39
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
72.2
0.78
1.1
79.65
37.1

Associated Gene:

Gene:
ZFYVE1
Ensembl Gene ID:
ENSAPLG00000005610
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005816
29606345 - 29627010
20666