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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29614182_29616076_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29614182 - 29616076
Intron Length:
1895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTACATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATAT
Flanking Amino Acid:
ETVYTKLLGSDHPSEVPEKL
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.5
41.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.6
0.58
0.9
69.5
34.9
Minor 5ss
35.3
-1.7
2.7
39.4
40.3
Minor BPS
65.1
0.55
1.6
84.45
36.3

Associated Gene:

Gene:
ZFYVE1
Ensembl Gene ID:
ENSAPLG00000005610
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005816
29606345 - 29627010
20666