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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29616582_29625692_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29616582 - 29625692
Intron Length:
9111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TAATATTTATTT
Flanking Amino Acid:
LLVDETEEIQVRNEEEFIKK
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
81
0.7
1
80.3
32.2
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
53.5
0.19
1.7
70.94
40.1

Associated Gene:

Gene:
ZFYVE1
Ensembl Gene ID:
ENSAPLG00000005610
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005816
29606345 - 29627010
20666