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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29633920_29636707_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29633920 - 29636707
Intron Length:
2788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTGAT
U12 Branch Point Sequence:
GATTGATTGATA
Flanking Amino Acid:
FPGFPPPVPPGTPMIPVPMG
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.2
28.3
Major BPS
70.8
0.52
1.2
63.4
44.3
Major PPT
85.3
0.79
0.8
84.4
30.5
Minor 5ss
40.6
-1
2.8
49.4
41.4
Minor BPS
48
-0.1
2
61.08
38.8

Associated Gene:

Gene:
RBM25
Ensembl Gene ID:
ENSAPLG00000006643
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006913
29633814 - 29651072
17259