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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29636758_29637787_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29636758 - 29637787
Intron Length:
1030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
CTCCTCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATACCC
Flanking Amino Acid:
PMGIMAPAPTVLVPTTVSMV
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.9
0.67
0.7
72.6
32.2
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
51.2
0.02
1.8
67.72
37.9

Associated Gene:

Gene:
RBM25
Ensembl Gene ID:
ENSAPLG00000006643
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006913
29633814 - 29651072
17259