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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29637959_29639038_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29637959 - 29639038
Intron Length:
1080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
ATCTTTACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTATCTTTACT
Flanking Amino Acid:
SDMLIRQLLAKCGLVLSWKR
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
80.2
0.68
0.8
74.6
34.3
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
70.9
0.74
1.6
88.68
35.8

Associated Gene:

Gene:
RBM25
Ensembl Gene ID:
ENSAPLG00000006643
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006913
29633814 - 29651072
17259