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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29639097_29640062_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29639097 - 29640062
Intron Length:
966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TCATTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTTTCTCATTT
Flanking Amino Acid:
RVQGASGKLQAFGFCEYKEP
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.8
0.69
0.9
78.1
34.8
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
56.4
0.28
1.8
76.55
40.4

Associated Gene:

Gene:
RBM25
Ensembl Gene ID:
ENSAPLG00000006643
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006913
29633814 - 29651072
17259