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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29640224_29643328_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29640224 - 29643328
Intron Length:
3105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTACGTATA
5'SS Class:
major
3'SS Sequence:
TGTTTTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTCTGTTACTT
Flanking Amino Acid:
WKAKRKASNGNTRPETTNDD
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
78.2
38.2
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
81.8
0.71
0.7
81.5
30.5
Minor 5ss
37.8
-1.4
3
42.3
44.6
Minor BPS
49.4
0.04
2.3
76.4
40.9

Associated Gene:

Gene:
RBM25
Ensembl Gene ID:
ENSAPLG00000006643
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006913
29633814 - 29651072
17259