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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29643512_29645685_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29643512 - 29645685
Intron Length:
2174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTATGTGTT
5'SS Class:
major
3'SS Sequence:
GATTTTTCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTATTTTTAAAA
Flanking Amino Acid:
RKKKKEKKEDIFRRFPVAPL
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.3
77.9
36.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.7
0.65
0.9
73.5
36.7
Minor 5ss
46.1
-0.4
3.2
65.4
39.5
Minor BPS
64.1
0.44
1.4
68.66
37.8

Associated Gene:

Gene:
RBM25
Ensembl Gene ID:
ENSAPLG00000006643
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006913
29633814 - 29651072
17259