About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29649942_29650849_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29649942 - 29650849
Intron Length:
908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TCTACTTAAATT
Flanking Amino Acid:
SDRNKDRSRSREKSRDRERE
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
83.7
0.76
0.8
81.6
30.5
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
60.3
0.4
1.7
75.87
41.7

Associated Gene:

Gene:
RBM25
Ensembl Gene ID:
ENSAPLG00000006643
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006913
29633814 - 29651072
17259