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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29653562_29653930_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29653562 - 29653930
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TATTTCATTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTTCCTAATT
Flanking Amino Acid:
HPDPDAELQRMEQEAERRRQ
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
76.2
39.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80
0.68
0.8
75.1
34.1
Minor 5ss
35.6
-1.6
2.7
37.6
40
Minor BPS
74.5
0.85
1.6
92.26
30

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024687
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036242
29653411 - 29657356
3946