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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29654256_29655236_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29654256 - 29655236
Intron Length:
981

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTATGGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATGAATA
Flanking Amino Acid:
RPKIGLSLKLGACNSPNQPN
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
75.6
40.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.3
0.57
0.9
69.7
41.3
Minor 5ss
33
-1.9
3.9
40.8
45.4
Minor BPS
58
0.25
1.7
71.68
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024687
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036242
29653411 - 29657356
3946