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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29655512_29655961_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29655512 - 29655961
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
GCTTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
AACTTATGGATT
Flanking Amino Acid:
YPLDWSIVDSTLMERRIRPW
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.3
32.1
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
86.7
0.83
0.7
84.6
30.3
Minor 5ss
41.7
-0.9
2.8
54.7
43.6
Minor BPS
45.7
-0.2
1.7
59.31
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024687
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036242
29653411 - 29657356
3946