About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29656061_29657257_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29656061 - 29657257
Intron Length:
1197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AGTTTTCAAACT
Flanking Amino Acid:
ATLVDFVCSKVMAHSSPQSI
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
1
86.4
29.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
87.5
0.84
0.7
85.4
29.3
Minor 5ss
36.7
-1.5
2.7
46.1
42.1
Minor BPS
49
0
1.9
71.15
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024687
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036242
29653411 - 29657356
3946