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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29665118_29669823_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
29665118 - 29669823
Intron Length:
4706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTATGTAAT
5'SS Class:
weak_major
3'SS Sequence:
TTATATATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGTTTTATATAT
Flanking Amino Acid:
NFPDNHLSNTNDNSERRRHD
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
70.9
40.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
80.3
0.68
0.9
74.5
39.5
Minor 5ss
45.4
-0.5
2.6
64
40.7
Minor BPS
47.7
-0
1.9
70.45
40.4

Associated Gene:

Gene:
PSEN1
Ensembl Gene ID:
ENSAPLG00000006843
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007129
29665034 - 29682704
17671