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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29666944_29669823_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29666944 - 29669823
Intron Length:
2880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTATATATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGTTTTATATAT
Flanking Amino Acid:
MASALFNTDQNDNSERRRHD
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
77.7
33.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
80.3
0.68
0.9
74.5
39.5
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
47.7
-0
1.9
70.45
40.4

Associated Gene:

Gene:
PSEN1
Ensembl Gene ID:
ENSAPLG00000006843
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043266
29666819 - 29682704
15886