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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29671292_29672891_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29671292 - 29672891
Intron Length:
1600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGATATTTATTT
Flanking Amino Acid:
VVLYKYRCYKVIHGWLIISS
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
91.7
0.94
0.7
84.7
35.8
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
52.7
0.16
1.7
70.48
40.6

Associated Gene:

Gene:
PSEN1
Ensembl Gene ID:
ENSAPLG00000006843
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043266
29666819 - 29682704
15886
ENSAPLT00000007129
29665034 - 29682704
17671