About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29728941_29729233_F

Intron Information:

Intron Rank:
137362
Intron Class:
major
Intron Phase:
Intron Coordinates:
29728941 - 29729233
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAATAC
5'SS Class:
major
3'SS Sequence:
CTCCTCCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTCCTCCAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
65.6
35
Major BPS
100
1.24
0.5
100
0
Major PPT
66.8
0.38
0.9
62.2
32.4
Minor 5ss
36.5
-1.5
3.3
50
46.5
Minor BPS
50.2
-0
2.1
68.84
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023973
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028606
29728050 - 29730671
2622