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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29733240_29734337_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29733240 - 29734337
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AGGTCAGGATAC
Flanking Amino Acid:
WSECSSECGGGFQSRLVFCT
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
80.5
0.69
0.7
78.4
30.4
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
33.9
-1.2
2.2
41.18
38

Associated Gene:

Gene:
PAPLN
Ensembl Gene ID:
ENSAPLG00000007165
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007432
29730692 - 29755336
24645