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Intron Name: Anas_platyrhynchos_platyrhynchos_5_29739453_29740763_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

29739453 - 29740763

Intron Length:

1311

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGCATC

5'SS Class:

major

3'SS Sequence:

CTCTGTGCCCAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

TCCTGCTCACTT

Flanking Amino Acid:

IGWHIGDWGLCSKSCNSGIR

Intron Amino Acid Position:

278

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.6

0.7

0.9

36.6

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

58.2

0.19

1.1

55.5

39.3

Minor 5ss

38.6

-1.3

48.9

41.6

Minor BPS

45.3

-0.2

2.2

63.16

47.6

Associated Gene:

Gene:

PAPLN

Ensembl Gene ID:

ENSAPLG00000007165

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007432

29730692 - 29755336

24645