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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29743534_29744737_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29743534 - 29744737
Intron Length:
1204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
CTCTTTCTGGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAG
U12 Branch Point Sequence:
CAGCCCTCACCT
Flanking Amino Acid:
GEGCLNRPNYPYPIICLLPS
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
72.7
38.8
Major BPS
53.7
0.09
1.5
69
38.9
Major PPT
74.6
0.55
0.9
72.9
32
Minor 5ss
36.2
-1.6
3.3
53.7
43.8
Minor BPS
48.1
-0
1.9
62.89
46.7

Associated Gene:

Gene:
PAPLN
Ensembl Gene ID:
ENSAPLG00000007165
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007432
29730692 - 29755336
24645