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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29745384_29746127_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29745384 - 29746127
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TCTCTTTTAAAG
Flanking Amino Acid:
ADSLPARDLHRAILEEAKPS
Intron Amino Acid Position:
751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
85.8
25.2
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
80
0.68
1
81.7
27.6
Minor 5ss
40.8
-1
3
58.4
46.2
Minor BPS
58.8
0.14
1.5
61.29
40.8

Associated Gene:

Gene:
PAPLN
Ensembl Gene ID:
ENSAPLG00000007165
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007432
29730692 - 29755336
24645