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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29747277_29748203_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29747277 - 29748203
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGATTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTGAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTGAATA
Flanking Amino Acid:
ERRQIQLQIIEYQSAVLAEG
Intron Amino Acid Position:
839

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
82
26
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.6
0.49
1
70.1
40
Minor 5ss
36.5
-1.5
2.9
49.3
46.9
Minor BPS
64.6
0.46
1.3
72.42
33.4

Associated Gene:

Gene:
PAPLN
Ensembl Gene ID:
ENSAPLG00000007165
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007432
29730692 - 29755336
24645