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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29748343_29749763_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29748343 - 29749763
Intron Length:
1421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GTGGACTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
GCATCTTTTACT
Flanking Amino Acid:
SSSVQPQFVYRLKMDKSESS
Intron Amino Acid Position:
885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
74.2
0.6
1
67
39.4
Major PPT
70.1
0.45
1
61.9
44.1
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
62.3
0.47
1.6
73.34
43.3

Associated Gene:

Gene:
PAPLN
Ensembl Gene ID:
ENSAPLG00000007165
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007432
29730692 - 29755336
24645