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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29749902_29750548_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29749902 - 29750548
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAAGCAC
U12 Branch Point Sequence:
GCTGAGGGGATT
Flanking Amino Acid:
QKDGQPLSSPRHRQQSDGAL
Intron Amino Acid Position:
931

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
43.4
-0.4
1.3
47.1
36.1
Major PPT
83.5
0.75
0.8
81.6
30.5
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
30.4
-1.4
2.4
44.56
40.6

Associated Gene:

Gene:
PAPLN
Ensembl Gene ID:
ENSAPLG00000007165
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007432
29730692 - 29755336
24645