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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29750677_29750827_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29750677 - 29750827
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACCAGAC
5'SS Class:
major
3'SS Sequence:
CCTTCTGGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
TAGTGATGATTT
Flanking Amino Acid:
DQRQVLLRPLGELRISGLTP
Intron Amino Acid Position:
974

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
60.6
39
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
63.9
0.31
0.9
57
38.7
Minor 5ss
35.2
-1.7
3.6
50
46.5
Minor BPS
41.2
-0.5
2.2
59.12
44.1

Associated Gene:

Gene:
PAPLN
Ensembl Gene ID:
ENSAPLG00000007165
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007432
29730692 - 29755336
24645