Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29752442_29752827_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29752442 - 29752827

Intron Length:

386

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTC|GTGAGTACA

5'SS Class:

major

3'SS Sequence:

TGCTTGGCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAG

U12 Branch Point Sequence:

CTGGCTTTACCT

Flanking Amino Acid:

EVKVLRNRPSPAVNHVDLSR

Intron Amino Acid Position:

1069

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.2

0.43

1.3

69.4

36.6

Major BPS

0.65

1.5

85.7

34.9

Major PPT

72.1

0.5

65.2

41.2

Minor 5ss

32.1

-2

2.6

35.4

34.5

Minor BPS

55.6

0.25

1.8

70.68

46.8

Associated Gene:

Gene:

PAPLN

Ensembl Gene ID:

ENSAPLG00000007165

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007432

29730692 - 29755336

24645