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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29760580_29761432_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29760580 - 29761432
Intron Length:
853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTCAT
5'SS Class:
major
3'SS Sequence:
GCTCCCATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CATGAATTAATT
Flanking Amino Acid:
VVAPQSPAFQVNGTASAFCV
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
71.7
39.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
70.3
0.46
0.9
66.6
34.2
Minor 5ss
38.3
-1.3
2.8
50.3
46
Minor BPS
49.2
0.02
1.9
67.2
43.5

Associated Gene:

Gene:
NUMB
Ensembl Gene ID:
ENSAPLG00000007245
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007559
29757943 - 29792252
34310