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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29780249_29792108_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29780249 - 29792108
Intron Length:
11860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAG
U12 Branch Point Sequence:
AACTATTAAGCT
Flanking Amino Acid:
RTGKCSFPVKYLGHVEVDES
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
67.8
0.44
1.5
75.9
36.3
Major PPT
81.1
0.7
0.7
76.6
25.5
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
44.7
-0.3
2
60.2
43.4

Associated Gene:

Gene:
NUMB
Ensembl Gene ID:
ENSAPLG00000007245
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007559
29757943 - 29792252
34310
ENSAPLT00000044001
29757943 - 29792252
34310