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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29862220_29862271_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
29862220 - 29862271
Intron Length:
52

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAAGAAA
5'SS Class:
major
3'SS Sequence:
GTAGATCAGAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
CACCCATTGATG
Flanking Amino Acid:
TAFVEKLQRLPSRFFMTVSP
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1
66
34.4
Major BPS
76.2
0.65
1
67
39.8
Major PPT
42.6
-0.4
1.7
39.3
43.6
Minor 5ss
25.6
-2.8
3
26.7
39
Minor BPS
46.6
-0.4
1.7
45.78
40.9

Associated Gene:

Gene:
RIOX1
Ensembl Gene ID:
ENSAPLG00000001531
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001520
29857610 - 29862694
5085