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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29863896_29866936_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
29863896 - 29866936
Intron Length:
3041

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCCTCATGG
5'SS Class:
weak_major
3'SS Sequence:
GGTGGCCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATGGAT
U12 Branch Point Sequence:
CCCCCATGGATC
Flanking Amino Acid:
LFSPEKRLRGARSLSSMAAS
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.8
0.23
1.3
40.6
45.3
Major BPS
51.3
0.03
1.4
52.7
43.2
Major PPT
62.3
0.28
1
50.6
43.9
Minor 5ss
34.1
-1.8
3.9
48
47.5
Minor BPS
42.7
-0.5
1.7
44.55
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029481
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039714
29863799 - 29873625
9827