Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29867278_29867335_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

29867278 - 29867335

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGTTGGAG

5'SS Class:

major

3'SS Sequence:

GGCCGAGCACGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGCCCAG

U12 Branch Point Sequence:

AGGCCGAGCACG

Flanking Amino Acid:

VQTPFRLQLERLFLRDGVRR

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.8

0.37

1.1

54.6

38.2

Major BPS

36.4

-0.8

1.6

37.9

43.6

Major PPT

40.4

-0.5

1.6

28.7

36.1

Minor 5ss

29.3

-2.4

3.4

36.9

47.7

Minor BPS

31.7

-1.5

2.3

34.04

39.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029481

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039714

29863799 - 29873625

9827