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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29867415_29870175_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29867415 - 29870175
Intron Length:
2761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTCAGGCAATA
Flanking Amino Acid:
RIRATLFLPPGEDLFPGIID
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
80.9
33.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
81.1
0.7
0.9
73.1
42.1
Minor 5ss
33.4
-1.9
2.8
44.7
42.7
Minor BPS
38.2
-0.9
2.6
57.95
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029481
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039379
29864895 - 29871450
6556