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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29867415_29870178_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
29867415 - 29870178
Intron Length:
2764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCCAGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
TTTCAGGCAATA
Flanking Amino Acid:
RIRATLFLPPEDLFPGIIDI
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
80.9
33.1
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
52.7
0.06
1.7
63.1
38.3
Minor 5ss
33.4
-1.9
2.8
44.7
42.7
Minor BPS
38.2
-0.9
2.6
57.95
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029481
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039714
29863799 - 29873625
9827