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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29877643_29877693_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29877643 - 29877693
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGCTTT
5'SS Class:
major
3'SS Sequence:
TATCATTAGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCATTAGTT
Flanking Amino Acid:
AINYMLKHTQVLSDCTQGRT
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.2
70.9
41.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
62.7
0.29
1.1
63
42.7
Minor 5ss
44.7
-0.6
3.2
64.8
46.5
Minor BPS
62.8
0.48
1.8
82.41
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007409
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007704
29875244 - 29879549
4306