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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29883789_29884446_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29883789 - 29884446
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTATCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CCTATCTTATCT
Flanking Amino Acid:
AARFLQRHPKVKGPGVGVIG
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
68.7
0.42
1.1
68.9
35.8
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
57.9
0.33
1.7
71.71
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007953
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008258
29880664 - 29900303
19640