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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29894310_29897061_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29894310 - 29897061
Intron Length:
2752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTATCTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTCTTTTATCT
Flanking Amino Acid:
IERIANLNSLKNLRILSLGR
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84.2
0.77
0.8
82.1
34
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
62.5
0.47
1.5
79.22
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007953
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008258
29880664 - 29900303
19640