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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29898247_29898641_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29898247 - 29898641
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCCAT
5'SS Class:
major
3'SS Sequence:
TTTGTGGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTTCACATTT
Flanking Amino Acid:
YMSNNLVKDWAEFARLAELP
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
43.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.2
0.66
1
72.9
42.2
Minor 5ss
39.1
-1.2
3.1
48.3
47.3
Minor BPS
46.5
-0.1
2
69.65
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007953
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008258
29880664 - 29900303
19640