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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29911390_29912810_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29911390 - 29912810
Intron Length:
1421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CGTGTTTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
CCAGCACTAACA
Flanking Amino Acid:
ENTFPCKKCGRVFYKVKSRS
Intron Amino Acid Position:
1040

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
58.7
0.22
1.2
67
38
Major PPT
75.7
0.58
0.9
72.9
37.4
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
45.4
-0.3
2
53.88
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008093
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008408
29911170 - 29931677
20508