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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29916338_29917646_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29916338 - 29917646
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CAAACATTAATT
Flanking Amino Acid:
FLHEAKGSILGALTKLLLKR
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.8
83.1
28.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.7
0.6
0.9
74.7
40
Minor 5ss
33.3
-1.9
3.4
45.9
43.7
Minor BPS
56.1
0.27
1.7
68.34
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008093
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008408
29911170 - 29931677
20508